(Looking for a student) Improving the twinning procedure of a state-of-the-art digital twin framework for type 1 diabetes

Thesis Proposal Details

Supervisor: Giacomo Cappon

Creation Date: 03/08/2025 15:55

Description

Digital twins for type 1 diabetes (T1D) aim to replicate the physiological responses of individual patients using mathematical models, enabling personalized and adaptive treatment. A critical step in this approach is the twinning procedure, i.e., the estimation of patient-specific parameters that allow the model to accurately mimic glucose-insulin dynamics under varying conditions such as meals, insulin injections, and physical activity.

This thesis investigates and compares multiple advanced inference methodologies for improving the twinning procedure within a state-of-the-art digital twin framework tailored for T1D patients. The focus will be on evaluating the effectiveness, robustness, and computational efficiency of the following approaches:

  • Maximum a Posteriori (MAP) estimation, which offers a fast and deterministic approach to parameter identification by optimizing the posterior distribution.

  • Markov Chain Monte Carlo (MCMC) methods, which provide asymptotically exact samples from the posterior and allow full uncertainty quantification, albeit at higher computational cost.

  • Simulation-Based Inference (SBI) techniques, including likelihood-free methods that leverage forward simulations and machine learning to approximate the posterior, offering scalability and flexibility.

  • Liquid Time-Constant Neural Networks (LTC-NN), a recent class of models that use deep learning to capture time-dependent latent dynamics, potentially enabling more expressive and data-driven representations of patient physiology.

The thesis will involve the development and implementation of these methods in a unified experimental pipeline. Performance will be assessed using synthetic data generated from the virtual patient models as well as real-world clinical data where available. Evaluation metrics will include predictive accuracy, convergence diagnostics, uncertainty calibration, and computational efficiency.

Dataset and methods

Dataset type: Already acquired data

Dataset description: The student will be provided with both simulated and real-world data of people with type 1 diabetes (N = 100 + 100) consisting of: - Glucose data collected every 5 minutes using Continuous Glucose Monitoring (CGM) sensors - Insulin data (bolus injections and basal rate) - Meal data (carbohydrate intake) - Physical activity data

List of Methods: MAP, MCMC, SBI, LTC-NN

Preparatory Courses

STATISTICAL METHODS FOR BIOENGINEERING MACHINE LEARNING AND DATA SCIENCE FOR BIOENGINEERING MODELING METHODOLOGY FOR PHYSIOLOGY AND MEDICINE Important: Completing these courses is preferable but not mandatory.

Tags
digitaltwin gmm modelidentification python tidepool twinning type1diabetes
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